PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G169300.1
Common NameB456_002G169300, LOC105785595
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 318aa    MW: 35409.5 Da    PI: 7.1078
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G169300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-331972255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Gorai.002G169300.1 19 PRLRWTPELHQCFVQAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                        8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-321576IPR009057Homeodomain-like
PROSITE profilePS5129413.2721575IPR017930Myb domain
SuperFamilySSF466891.79E-161774IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-251972IPR006447Myb domain, plants
PfamPF002492.0E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHQC FVQAIERLGG QDKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRSDLSRQ DRSSTHQRRQ SFEKHDGCVD DVIDIMGFHS TSKPIEESDS  120
HLIHSPLPSK RARIETKSSI SDQNLQCSQG VCERVSNPYF YDDYLQTMAV YKGIKEGNGA  180
FIWEHTQTHP QAQGQSTTFS LPHDLYNLNS FKYSVEESDF LKVSKVDVED HKNVGKHVDD  240
HPNARRHAGK DDEVEDKGGG CELSLSLSLH HPSSQSEISS SSEALSLVSG SNYKDCSGSS  300
CTLRSINLDL SIALCGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467160.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A0D2MC480.0A0A0D2MC48_G
STRINGVIT_01s0137g00050.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-34G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]